PUBLICATIONS

 

View current publications at Pubmed or at Google Scholar.

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Cover Issues

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Top / Books / Articles in Peer-reviewed Journals / Chapters in Books and Proceedings

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Books

 

Caetano-Anollés, G. 2016. Untangling molecular biodiversity. World Scientific Press, in press.

 

Caetano-Anollés, G. 2010. Evolutionary Genomics and Systems Biology. Wiley-Blackwell, Hoboken, NJ.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1997. DNA markers: Protocols, Applications and Overviews. John Wiley & Sons, Inc., New York.

 

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Top / Books / Articles in Peer-reviewed Journals / Chapters in Books and Proceedings

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Articles in Peer-reviewed Journals

 

Nasir, A., K.M. Kim, V. Da Cunha, and G. Caetano-Anollés. 2016. Arguments reinforcing the three-domain view of diversified cellular life. Archaea 2016: 1851865.

 

Caetano-Anollés, G. and D. Caetano-Anollés. 2016. Piecemeal buildup of the genetic code, ribosomes, and genomes from primordial tRNA building blocks. Life 6: 43. Doi:10.3390/life6040043

 

Ribeiro Santiago, T., C.A. Lopes, G. Caetano-Anollés, E.S.G. Mizubuti. 2016. Phylotype and sequevar variability of Ralstonia solanacearum in Brazil, and ancient center of diversity of the pathogen. Plant Pathology, doi://10.1111/ppa.12586

 

Ghandchi, F.P., G. Caetano-Anollés, S.J. Clough, D.R. Ort. 2016. Investigating the control of chlorophyll degradation by genomic correlation mining. PLoS ONE 11(9): e0162327.

 

Chang, H.-X, C.R. Yendrek, G. Caetano-Anollés, and G.L. Hartman. 2016. Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanases and polygalacturonases of Fusarium virguliforme. BMC Microbiology 16: 147.

 

Tal, G., S.M. Boca, J.E. Mittenthal, and G. Caetano-Anollés. 2016. A dynamic model for the evolution of protein structure. J. Molecular Evolution 82: 230-243.

 

Aziz, F., K. Caetano-Anollés, and G. Caetano-Anollés. 2016. The early history and emergence of molecular functions and modular scale-free network behavior. Scientific Reports 6: 25058.

 

Nasir, A., K.M. Kim, and G. Caetano-Anollés. 2016. No ‘small genome attraction’ artifact: A response to Harish et al. ‘Did viruses evolve as a distinct supergroup from common ancestors of cells?’ bioRxiv, doi: 10.1101/050179.

 

Nasir, A., and G. Caetano-Anollés. 2015. A phylogenomic data-driven exploration of viral origins and evolution. Science Advances 1: e1500527.

 

Shahzad, K., J.E. Mittenthal and G. Caetano-Anollés. 2015. The organization of domains in proteins obeys Menzerath-Altmann’s law of language. BMC Systems Biology 9: 44.

 

Caetano-Anollés, G. and D. Caetano-Anollés. 2015. Computing the origin and evolution of the ribosome from its structure – Uncovering processes of macromolecular accretion benefiting synthetic biology. Computational and Structural Biotechnology Journal 13: 427-447.

 

Nasir, A., K.M. Kim, and G. Caetano-Anollés. 2015. Lokiarchaeaota: eukaryote-like missing links from microbial dark matter? Trends in Microbiology 23: 448-450.

 

Caetano-Anollés, G. 2015. Ribosomal accretion, apriorism and the phylogenetic method: a response to Petrov and Williams. Frontiers in Genetics 6: 194.

 

Caetano-Anollés, G. 2015. Ancestral insertions and expansions of rRNA do not support an origin of the ribosome in its peptidyl transferase center. J. Molecular Evolution 80: 162-165.

 

Nasir, A., F.-J. Sun, K.M. Kim, and G. Caetano-Anollés. 2015. Untangling the origin of viruses and their impact on cellular evolution. Annals of the New York Academy of Sciences 1341: 61-74.

 

Mercante, V., C.D. Duarte, C.M. Sánchez, A. Zalguizuri, G. Caetano-Anollés, and V.C. Lepek. 2015. The absence of protein Y4yS affects negatively the abundance of T3SS Mesorhizobium loti secretin, RhcC2, in bacterial membranes. Frontiers in Plant Science 6:12. doi: 10.3389/fpls.2015.00012

 

Kim, K.M., A. Nasir, K. Hwang and G. Caetano-Anollés. 2014. A tree of cellular life inferred from a genomic census of molecular functions. J. Molecular Evolution 79(5-6):240-62. [The paper was featured in the cover of this journal]

 

Nasir, A., K.M. Kim and G. Caetano-Anollés. 2014. A phylogenomic census of molecular functions identifies modern thermophilic Archaea as the most ancient form of cellular life. Archaea 2014: 915828.

 

Caetano-Anollés, G., J.E. Mittenthal, D. Caetano-Anollés and K.M. Kim. 2014. A calibrated chronology of biochemistry reveals a stem line of descent responsible for planetary biodiversity. Frontiers in Genetics 5: 306.

 

Nath, N., J. B.O. Mitchell, G. Caetano-Anollés. 2014. The natural history of biocatalytic mechanisms. PLoS Computational Biology 10: e1003642.

 

Nasir, A., K.M. Kim and G. Caetano-Anollés. 2014. Global patterns of protein domain gain and loss in superkingdoms. PLoS Computational Biology 10: e1003452.

 

Caetano-Anollés, G., and K.M. Kim. 2014. The origin and evolution of the archaeal domain. Archaea 2014: 915828.

 

Caetano-Anollés, G., A. Nasir, K. Zhou, F.-J. Sun and K.M. Kim. 2014. Archaea: The first domain of diversified life. Archaea 2014: 590214.

 

Caetano-Anollés, G., and F.-J. Sun. 2014. The natural history of transfer RNA and its interactions with the ribosome. Frontiers in Genetics 5: 127.

 

Nasir, A., P. Forterre, K.M. Kim and G. Caetano-Anollés. 2014. The distribution and impact of viral lineages in domains of life. Frontiers in Microbiology 5: 194.

 

Kim, K.M., A. Nasir and G. Caetano-Anollés. 2013. The importance of using realistic evolutionary model for retrodicting proteomes. Biochimie 99: 129-137.

 

Nasir, A. and G. Caetano-Anollés. 2013. Comparative analysis of proteomes and functionomes provided insights into origins of cellular diversification. Archaea 2013: 648746.

 

Yafremava, L.S., M. Di Giulio and G. Caetano-Anollés. 2013. Comparative analysis of barophily-related amino acid content in protein domains of Pyrococcus abyssi and Pyrococcus furiosus. Archaea 2013: 680436.

 

Caetano-Anollés, G., M. Wang and D. Caetano-Anollés. 2013. Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility. PLoS ONE 8(8): e72225.

 

Hwang, K., J. Oh, B.K. Kim, D.S. Yu, B.K. Hou, G. Caetano-Anollés, S.G. Hong, and K.M. Kim. 2013. CLUSTOM: A novel method for clustering 16S rRNA next generation sequences by overlap minimization. PLoS ONE 8(5): e62623.

 

Bukhari, S.A. and G. Caetano-Anollés. 2013. Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes. PLoS Computational Biology 9(3): e1003009.

 

Caetano-Anollés, K., and G. Caetano-Anollés. 2013. Structural phylogenomics reveals gradual evolutionary replacement of abiotic chemistries by protein enzymes in purine metabolism. PLoS ONE 8: e59300.

 

Kim, H.S., J.E. Mittenthal, and G. Caetano-Anollés. 2013. Widespread recruitment of ancient domain structures in modern enzymes during metabolic evolution. Journal of Integrative Bioinformatics 10: 214.

 

Debes, C., M. Wang, G. Caetano-Anollés and F. Graeter. 2013. Evolutionary optimization of protein folding. PLoS Computational Biology 9: e1002861.

 

Yafremava, LS, M. Wielgos, S. Thomas, M. Wang, A. Nasir, J.E. Mittenthal, and G. Caetano-Anollés. 2013. A general framework of persistence strategies for biological systems helps explain domains of life. Frontiers in Genetics 4: 16.

 

Caetano-Anollés, G. and M.J. Seufferheld. 2013. The coevolutionary roots of biochemistry and cellular organization challenge the RNA world paradigm. J. Molecular Microbiology Biotechnology 23: 152-177.

 

Seufferheld, M.J. and G. Caetano-Anollés. 2013. Phylogenomics supports a cellularly structured urancestor. J. Molecular Microbiology Biotechnology 23:178-191.

 

Aziz, F., P. Chan, J. Osorio, B.F. Minhas, V. Parekatt, and G. Caetano-Anollés. 2012. Stress induces biphasic-rewiring and modularization in the metabolomics networks of Escherichia coli. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Conference Publication, pp. 593-597. doi: 10.1109/BIBM.2012.6392626

 

Nasir, A., K.M. Kim, and G. Caetano-Anollés. 2012. Viral evolution: primordial cellular origins and late adaptation to parasitism. Mobile Genetic Elements 2 (5): 1-6.

 

Caetano-Anollés, G. and A. Nasir. 2012. Benefits of using molecular structure and abundance in phylogenomic analysis. Frontiers in Genetics 3: 172.

 

Nasir, A., K.M. Kim, and G. Caetano-Anollés. 2012. Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya. BMC Evolutionary Biology 12: 156.

 

Zhang, H.-Y, T. Qin, Y.-Y. Jiang and G. Caetano-Anollés. 2012. Structural phylogenomics uncovers the early and concurrent origins of cysteine biosynthesis and iron-sulfur proteins. J. Biomolecular Structure and Dynamics 30: 542-545.

 

Mittenthal, J.E., D. Caetano-Anollés and G. Caetano-Anollés. 2012. Biphasic patterns of diversification and the emergence of modules. Frontiers in Genetics 3: 147.

 

Harish, A. and G. Caetano-Anollés. 2012. Ribosomal history reveals the origins of modern protein synthesis. PLoS ONE 7(3): e32776.

 

Jiang, Y.-Y., D.-X. Kong, T.R. Qin, X. Li, G. Caetano-Anollés and H.Y. Zhang. 2012. The impact of oxygen on metabolic evolution: a chemoinformatic investigation. PLoS Computational Biology 8: e1002426.

 

Wang, M. and G. Caetano-Anollés. 2013. The molecular clock. Brenner’s Encyclopedia of Genetics (v. 1-4), 2nd. Edition, Academic Press. ISBN 9780080961569, http://books.google.com/books?id=4cj64BhrnjcC

 

Caetano-Anollés, G. 2013. The RNA world. Brenner’s Encyclopedia of Genetics (v. 1-4), 2nd. Edition, Academic Press. ISBN 9780080961569, http://books.google.com/books?id=4cj64BhrnjcC

 

Kim, K.M. and G. Caetano-Anollés. 2012. The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms. BMC Evolutionary Biology 12:13.

 

Caetano-Anollés, G., K.M. Kim and D. Caetano-Anollés. 2012. The phylogenomic roots of modern biochemistry: Origins of proteins, cofactors and protein biosynthesis. J. Molecular Evolution 74: 1-34. Erratum published in the same issue.

 

Kim, K.M., T. Qin, Y.-Y. Jiang, L.-L. Chen, M. Xiong, D. Caetano-Anollés, H.-Y. Zhang, and G. Caetano-Anollés. 2012. Protein domain structure uncovers the origin of aerobic metabolism and the rise of planetary oxygenation. Structure 20:67-76. [The paper was featured in the cover of this Cell Press journal]

 

Nasir, A., A. Naeem, M.J. Kahn, H.D. Lopez Nicora and G. Caetano-Anollés. 2011. Annotation of protein domains reveals remarkable conservation in the functional make up of proteomes across superkingdoms. Genes 2:869-911.

 

Seufferheld, M.J., K.M. Kim, J. Whitfield, A. Valerio, and G. Caetano-Anollés. 2011. Evolution of vacuolar proton pyrophosphatase domains and volutin granules: Clues into the early evolutionary origin of the acidocalcisome. Biology Direct 6:50.

 

Wang, M., C. Kurland and G. Caetano-Anollés. 2011. Reductive evolution of proteomes and protein structures. Proceedings of the National Academy of Sciences USA 108:11954-11958.

 

Kim, K.M. and G. Caetano-Anollés. 2011. The proteomic complexity and rise of the primordial ancestor of diversified life. BMC Evolutionary Biology 11:140.

 

Twizeyimana, M., P.S. Ojiambo, J.S. Haudenshield, G. Caetano-Anollés, K.F. Pedeley, R. Bandyopadhyay, and G.L. Hartman.  2011. Genetic structure and diversity of Phakopsora pachyrhizi isolates from soybean. Plant Pathology 60:719-729.

 

Wang, M., Y.-Y. Jiang, K.M. Kim, G. Qu, H.-F., Ji, J.E. Mittenthal, H.-Y., Zhang, and G. Caetano-Anollés. 2011. A universal clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation. Molecular Biology Evolution 28: 567-582.

 

Caetano-Anollés, D., K.M. Kim, J. E. Mittenthal, and G. Caetano-Anollés. 2011. Proteome evolution and the metabolic origins of translation and cellular life. J. Molecular Evolution 72: 14-32.

 

Dupont, C., and G. Caetano-Anollés. 2010. Reply to Mulkidjanian and Glaperin: Zn may have constrained evolution during the Proterozoic but not the Archean. Proceedings of the National Academy of Sciences USA 107: E138.

 

Dupont, C., A. Butcher, R.E. Valas, P.E. Bourne, and G. Caetano-Anollés. 2010. History of biological metal utilization inferred through phylogenomic analysis of protein structures. Proceedings of the National Academy of Sciences USA 107: 10567-10572.

 

Sun, F.-J. and G. Caetano-Anollés. 2010. The origin of modern 5S rRNA: a case relating models of structural history to phylogenetic data. J. Molecular Evolution 71: 3-5.

 

Caetano-Anollés, G., and J.E. Mittenthal. 2010. Exploring the interplay of stability and function in protein evolution: new methods further elucidate why proteins stability is necessarily so tenuous and stability-increasing mutations compromise biological function. Bioessays 32: 655-658. [The paper was featured in the cover]

 

Kim, K.M. and G. Caetano-Anollés. 2010. Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data. Molecular Biology Evolution 27: 1710-1733.

 

Qi, M., F.-J Sun, G. Caetano-Anollés, and Y. Zhao. 2010. Comparative genomic and phylogenetic analysis of two-component signal transduction systems in Erwinia amylovora and related enterobacteria. J. Molecular Evolution 70: 167-180.

 

Sun, F.-J. and G. Caetano-Anollés. 2010. The ancient history of the structure of ribonuclease P and the early origins of Archaea. BMC Bioinformatics 11: 153.

 

Sun, F.-J. and G. Caetano-Anollés. 2009. The evolutionary history of the structure of 5S rRNA. J. Molecular Evolution 69: 430-443. [The paper was featured in the cover]

 

Sun, F.-J., and G. Caetano-Anollés.  2009. The evolutionary significance of the long variable arm in transfer RNA. Complexity 14: 26-39. [The paper was featured in the cover]

 

Caetano-Anollés, G., M. Wang, D. Caetano-Anollés and J.E. Mittenthal. 2009. The origin, evolution and structure of the protein world. Biochemical Journal 417: 621-637.

 

Wang, M. and G. Caetano-Anollés. 2009. The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world. Structure 17: 66-78. [The paper was featured in the cover of this Cell Press journal]

68. Sun, F.-J., and G. Caetano-Anollés. 2008. Transfer RNA and the origins of diversified life. Science Progress 91 (3): 265-284.

 

Caetano-Anollés, G., L.S. Yafremava, H. Gee, D. Caetano-Anollés, H.S. Kim, and J.E. Mittenthal. 2009. The origin and evolution of modern metabolism. International Journal Biochemistry and Cell Biology 41: 285-297.

 

Kim, K.M., S. Sung, G. Caetano-Anollés, J.Y. Han, and H. Kim. 2008. An approach of orthology detection from homologous sequences under minimum evolution. Nucleic Acids Research 36 (17): e110.

 

Sun, F.-J., and G. Caetano-Anollés. 2008. Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code. PLoS ONE 3(7): e2799

 

Knudsen, V. and G. Caetano-Anollés. 2008. NOBAI: a web server for character coding of geometrical and statistical features in RNA structure. Nucleic Acids Research 36: W85-W90.

 

Caetano-Anollés, G., F.-J. Sun, M. Wang, L.S. Yafremava, A. Harish, H.S. Kim, V. Knudsen, D. Caetano-Anollés, and J.E. Mittenthal. 2008. Origins and evolution of modern biochemistry: insights from genomes and molecular structure. Frontiers Bioscience 13: 5212-5240.

 

Caetano-Anollés, G. 2008. Launch Editorial. Genomics Insights 1: 1-2.

 

Caetano-Anollés, G. and M. Wang. 2008. Evolution of the protein world. The Biochemist  30: 4-8. [special issue in celebration of the 50th anniversary of the first protein structure]

 

Sun, F.-J. and G. Caetano-Anollés. 2008. Evolutionary patterns in the sequence and structure of transfer RNA: early origins of Archaea and viruses. PLoS Computational Biology 4(3): e100000018

 

Sun, F.-J. and G. Caetano-Anollés. 2008. The origin and evolution of tRNA inferred from phylogenetic analysis of structure. J. Molecular Evolution 61: 21-35.

 

Martin, N., E.A. Ruedi, R. LeDuc, F. Sun and G. Caetano-Anollés. 2007. Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: Are they proof of an ancient genome duplication event? Biology Direct 2: 23.

 

Wang, M., L.S. Yafremava, D. Caetano-Anollés, J.E. Mittenthal and G. Caetano-Anollés. 2007. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Genome Research 17: 1572-1585. [The paper was featured in the cover of the journal]

 

Caetano-Anollés, G., H. S. Kim and J.E. Mittenthal. 2007. The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture. Proceedings of the National Academy of Sciences USA 104: 9358-9363.

 

Sun, F., S. Fleurdepine, C. Bousquet-Antonelli, G. Caetano-Anollés and J-M Deragon. 2007. Common evolutionary trends for tRNA-derived SINE RNA structures. Trends Genetics 23: 26-33.

 

Wang, M. and G. Caetano-Anollés. 2006. Global phylogeny determined by the combination of protein domains in proteomes. Molecular Biology Evolution 23: 2444-2453.

 

Wang, M., S.M. Boca, R. Kalelkar, J.E. Mittenthal, and G. Caetano-Anollés. 2006. A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture. Complexity 12:27-40.

 

Kim, H. S., G. Caetano-Anollés, and J.E. Mittenthal. 2006. MANET: Tracing evolution of protein architecture in metabolic networks. BMC Bioinformatics 7: 351

 

Caetano-Anolles, G. 2005. Evolution of genome size in the grasses.  Crop Science 45: 1809-1816.

 

Caetano-Anollés, G. 2005. Grass evolution inferred from chromosomal rearrangements and geometrical and statistical features in RNA structure. J. Molecular Evolution 60:635-652.

 

Caetano-Anollés, G. and D. Caetano-Anollés. 2005. Universal sharing patterns in proteomes and evolution of protein fold architecture and life. J. Molecular Evolution 60: 484- 498.

 

Caetano-Anollés, G. 2004. Protein evolution: Charting the universe of macromolecular structure. Chemistry Today 21: 20-21.

 

Abesha, E., G. Caetano-Anollés, and K. Høiland. 2003. Patterns of propagation of the fairy ring fungus Marasmius oreades in a Norwegian sand dune ecosystem revealed by DNA amplification fingerprinting. Mycologia 95: 1021-1031.

 

Caetano-Anollés, G. and D. Caetano-Anollés. 2003. An evolutionarily structured universe of protein architecture.  Genome Research 13:1563-1571.

 

Mathesius, U., S. Mulders, M. Gao, M. Teplitski, G. Caetano-Anollés, B. G. Rolfe, and W.D. Bauer. 2003. Extensive and specific responses of an eukaryote to quorum sensing signals. Proceedings of the National Academy of Sciences USA 100: 1444-1449.

 

Caetano-Anollés, G. 2002. Tracing the evolution of RNA structure in ribosomes. Nucleic Acids Research 30:2575-2587.

 

Caetano-Anollés, G. 2002. Evolved RNA secondary structure and the rooting of the universal tree. J. Molecular Evolution 54: 333-345.

 

Caetano-Anollés, G. 2001. Novel strategies to study the role of mutation and nucleic acid structure in evolution. Plant Cell, Tissue and Organ Culture 67: 115-132.

 

Caetano-Anollés, G., R.N. Trigiano and M.K. Windham. 2001. Patterns of evolution in Discula fungi and the origin of dogwood anthracnose in North America studied using arbitrarily amplified and ribosomal DNA. Current Genetics 39: 346-354.

 

Caetano-Anollés, G. 1999. High genome-wide mutation rates in vegetatively propagated bermudagrass. Molecular Ecology 8: 1211-1221.

 

Caetano-Anollés, G., S.E. Schlarbaum and R.N. Trigiano. 1999. Taguchi-optimized DNA amplification fingerprinting and marker screening for pseudo-testcross mapping of flowering dogwood (Cornus florida L.). Euphytica 106: 209-222.

 

Caetano-Anollés, G. 1998. Genetic instability of bermudagrass cultivars Tifgreen and Tifdwarf detected by DAF and ASAP analysis of accessions and off-types. Euphytica 101: 165-173.

 

Trigiano, R.N. and G. Caetano-Anollés. 1998. DNA amplification fingerprinting of horticultural species: four laboratory exercises. HortTechnology 8: 413-423.

 

Trigiano, R., M. C. Scott and G. Caetano-Anollés. 1998. Genetic signatures from amplification profiles characterize DNA mutation in somatic and radiation-induced sports of chrysanthemum. J. Amer. Soc. Hort. Science 123: 642-646.

 

Caetano-Anollés, G. 1998. Técnicas geneticas para el rastreo de acidos nucleicos. Investigacion y Ciencia (Spanish Edition of Scientific American) 263: 33-34.

 

Caetano-Anollés, G. 1998. Optimization of DNA amplification fingerprinting using modified Taguchi methods and the effect of thermal cycling. Biotechniques 25: 472-480.

 

Caetano-Anollés, G. 1998. DNA analysis of genetic diversity in turfgrass. Crop Science 38: 1415-1424.

 

Caetano-Anollés, G. and R.N. Trigiano. 1997. DNA markers in agricultural biotechnology. AgBiotech News and Information 9: 235-242.

 

Caetano-Anollés, G., L.M. Callahan and P.M. Gresshoff. 1997. The origin of bermudagrass (Cynodon) off-types inferred by DNA amplification fingerprinting. Crop Science 37: 81-87.

 

Caetano-Anollés, G. 1997. Molecular dissection and improvement of nodulation in legumes. Field Crops Research 53: 47-68.

 

Cerny, T.A., G. Caetano-Anollés, R.N. Trigiano and T.W. Starman. 1996. Molecular phylogeny and DNA amplification fingerprinting of Petunia taxa. Theor. Applied Genetics 92: 1009-1016.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1996. Generation of sequence signatures from DNA amplification fingerprints with mini-hairpin and microsatellite primers. Biotechniques 20: 1044-1056.

 

Salazar, N. and G. Caetano-Anollés. 1996. Nucleic acid scanning-by-hybridization of enterohemorrhagic Escherichia coli isolates using oligodeoxynucleotide arrays. Nucleic Acids Research 24: 5056-5057.

 

Caetano-Anollés, G., R.N. Trigiano and M.T. Windham. 1996. Sequence signatures from DNA amplification fingerprints reveal fine population structure of the dogwood-pathogen Discula destructiva. FEMS Microbiology Letters 145: 377-383.

 

Caetano-Anollés, G. 1996. Scanning of nucleic acids by in vitro amplification: new developments and applications. Nature Biotechnology 14: 1668-1674.

 

Caetano-Anollés, G. 1996. Fingerprinting nucleic acids with arbitrary oligonucleotide primers. Agro-Food-Industry Hi-Tech 7: 26-35

 

Scott, M.C., G. Caetano-Anollés and R.N. Trigiano. 1996. DNA amplification fingerprinting identifies closely related cultivars of chrysanthemum. J. Amer. Soc. Hort. Science 121: 1043-1048.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1996. Advances in the positional cloning of nodulation genes in soybean. Plant and Soil 186:1-7.

 

Trigiano, R.N., G. Caetano-Anollés, B.J. Bassam, and M.T. Windham. 1995. DNA amplification fingerprinting provides evidence that Discula destructiva, the cause of dogwood anthracnose in North America, is an introduced pathogen. Mycologia 87:490-500.

 

Weaver, K.R., L.M. Callahan, G. Caetano-Anollés, and P.M. Gresshoff. 1995. DNA amplification fingerprinting and hybridization analysis of centipedegrass. Crop Science 35:881-885.

 

Weaver, K.R., G. Caetano-Anollés, P.M. Gresshoff and L.M. Callahan. 1994. Isolation and cloning of DNA amplification products from silver stained polyacrylamide gels. Biotechniques 16:226-227.

 

Callahan, L.M., K. Weaver, G. Caetano-Anollés, B.J. Bassam and P.M. Gresshoff. 1993. DNA fingerprinting of turfgrasses. International Turfgrass Society Research J. 7: 761-767.

 

Caetano-Anollés, G., L.M. Callahan, P.E. Williams, K.R. Weaver, and P.M. Gresshoff. 1995. DNA amplification fingerprinting analysis of bermudagrass (Cynodon): genetic relationships between species and interspecific crosses. Theor. Applied Genetics 91:228-235.

 

Caetano-Anollés, G., B.J. Bassam, and P.M. Gresshoff. 1994. Buffer components tailor DNA amplification with arbitrary primers. PCR Methods and Applications 4:59-61 (currently Genome Research).

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1993. Enhanced detection of polymorphic DNA by multiple arbitrary amplicon profiling: finding markers tightly linked to the supernodulation locus in soybean. Molecular and General Genetics 241:57-64.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting of plant genomes. Methods in Molecular and Cellular Biology 5:62-70.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting using mini-hairpin oligonucleotide primers. Bio/technology (currently Nature Biotechnology) 12:619-623.

 

Caetano-Anollés, G. 1994. MAAP: a versatile and universal tool for genome analysis. Plant Molecular Biology 25:1011-1026.

 

Blauenfeldt, J., P.A. Joshi, P.M. Gresshoff and G. Caetano-Anollés. 1994. Nodulation of white clover (Trifolium repens) in the absence of Rhizobium. Protoplasma 179:106-110.

 

Bassam, B.J. and G. Caetano-Anollés. 1993. Automated “Hot Start” PCR using mineral oil and parrafin wax. Biotechniques 14:30-34.

 

Joshi, P.A., G. Caetano-Anollés, E.T. Graham, and P.M. Gresshoff. 1993. Ultrastructure of transfer cells in spontaneous nodules of alfalfa (Medicago sativa). Protoplasma 172:64-76.

 

Jayarao, B., B.J. Bassam, G. Caetano-Anollés, P.M. Gresshoff and S. Oliver. 1992. DNA amplification fingerprinting of Streptococcus uberis. J. Clinical Microbiology 30:1347-1350.

 

Eskew, D.L., Q. Jian, G. Caetano-Anollés, and P.M. Gresshoff. 1993. Kinetics of nodule development in Glycine soja. Plant Physiology 103:1139-1145.

 

Callahan, L.M., G. Caetano-Anollés, B.J. Bassam, K. Weaver, A. MacKenzie and P.M. Gresshoff 1993. DNA fingerprinting of turfgrass. Golf Course Management 9:80-86.

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. DNA fingerprinting: MAAPing out a RAPD redefinition. Bio/technology (currently Nature Biotechnology) 10:937.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1993. Nodule distribution of soybean and a supernodulating mutant in sand-vermiculite. Plant Soil 140:265-270.

 

Caetano-Anollés, G. and B.J. Bassam. 1993. DNA amplification fingerprinting using arbitrary oligonucleotide primers. Appl. Biochemistry Biotechnology  42:189-200.

 

Caetano-Anollés, G. 1993. Amplifying DNA with arbitrary oligonucleotide primers. PCR Methods and Applications 3:85-94 (currently Genome Research).

 

Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1992. DNA amplification fingerprinting of bacteria. Appl. Microbiology Biotechnology 38:70-76.

 

Bassam, B.J. and G. Caetano-Anollés. 1993. Silver staining of DNA in polyacrylamide gels. Appl. Biochemistry Biotechnology  42:181-188.

 

Caetano-Anollés, G., E. Wrobel-Boerner, and W.D. Bauer. 1992. Growth and movement of spot inoculated Rhizobium meliloti on the root surface of alfalfa. Plant Physiology 98:1181-1189.

 

Caetano-Anollés, G., and P.M. Gresshoff. 1992. Plant genetic suppression of the non-nodulation phenotype of Rhizobium meliloti host-range nodH mutants: gene-for-gene interaction in the alfalfa-Rhizobium symbiosis? Theor. Applied Genetics 84:624-632.

 

Caetano-Anollés, G., B.J. Bassam, and P.M. Gresshoff 1992. Fingerprinting genomes with arbitrary oligonucleotide primers. Molecular Genetics: Life Science Advances 11:1-6.

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides. Molecular and General Genetics 235:157-165.

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1991. DNA amplification fingerprinting using very short arbitrary oligonucleotides. Bio/technology (currently Nature Biotechnology) 9:553-557.

 

Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1991. Rapid and sensitive silver staining of nucleic acids in polyacrylamide gels. Analytical Biochemistry 196:80-83.

 

Caetano-Anollés, G., B. J. Bassam, and P.M. Gresshoff 1991. DNA amplification fingerprinting: a strategy for genome analysis. Plant Molecular Biology Reporter 9:292-305.

 

Gerahty, N., G. Caetano-Anollés, P.A. Joshi and P.M. Gresshoff. 1992. Anatomical analysis of nodule development in soybean reveals an additional autoregulatory control point. Plant Science 85:1-7.

 

Lagares, A., G. Caetano-Anollés, K. Niehaus, J. Lorenzen, H.D. Ljunggren, A. Pühler and G. Favelukes. 1992. A Rhizobium meliloti lipopolysaccharide mutant altered in competitiveness for nodulation of alfalfa. J. Bacteriology 174:5941-5952.

 

Eskew, D.L., G. Caetano-Anollés, B.J. Bassam and P.M. Gresshoff. 1992. DNA amplification fingerprinting of the Azolla-Anabaena symbiosis. Plant Molecular Biology 21: 363-373.

 

Caetano-Anollés, G. and P.M. Gresshoff 1991. Plant genetic control of nodulation. Annu. Review Microbiology 45:345-382.

 

Caetano-Anollés, G. and P.M. Gresshoff 1991. Nodulation in the absence of Rhizobium: organ morphogenesis without external signaling. Plant Physiology: Life Science Advances 10:195-200.

 

Caetano-Anollés, G, P.A. Joshi and P.M. Gresshoff. 1991. Spontaneous nodules induce feedback suppression of nodulation in alfalfa. Planta 183:77-82.

 

Caetano-Anollés, G., E.T. Paparozzi and P.M. Gresshoff. 1991. Mature nodules and root tips control nodulation in soybean. J. Plant Physiology 137: 389-396.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1991. Alfalfa controls nodulation during the onset of Rhizobium-induced cortical cell division. Plant Physiology 95:366-373.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1991. Efficiency of nodule initiation and autoregulatory responses in a supernodulating soybean mutant. Appl. Environ. Microbiology 57:2205-2210.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1991. Excision of nodules induced by Rhizobium meliloti exopolysaccharide mutants releases autoregulation in alfalfa. J. Plant Physiology 138:765-767.

 

Joshi, P.A., G. Caetano-Anollés, G., E.T. Graham and P.M. Gresshoff. 1991. Ontogeny and ultrastructure of spontaneous nodules in alfalfa (Medicago sativa). Protoplasma 162:1-11.

 

Caetano-Anollés, G., G. Favelukes, and W.D. Bauer. 1990. Optimization of legume seed sterilization. Crop Science  30:708-712.

 

Bauer, W. D. and G. Caetano-Anollés. 1990. Chemotaxis, induced gene expression and competitiveness in the rhizosphere. Plant Soil 129:45-52.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1990. Early induction of feedback regulatory responses governing nodulation in soybean. Plant Science 71:69-81.

 

Caetano-Anollés, G., A. Lagares, and W.D. Bauer. 1990. Rhizobium meliloti exopolysaccharide mutants elicit feedback regulation of nodule formation in alfalfa. Plant Physiology 91:368-374.

 

Caetano-Anollés, G. and W.D. Bauer. 1990. Host-specificity mutants of Rhizobium meliloti have additive effects in situ on initiation of alfalfa nodules. Planta 181:109-116.

 

Caetano-Anollés, G., A. Lagares, and G. Favelukes. 1989. Adsorption of Rhizobium meliloti to alfalfa roots: Dependence on divalent cations and pH. Plant Soil 117:67-74.

 

Caetano-Anollés, G. D.K. Crist-Estes, and W.D. Bauer. 1988. Chemotaxis of Rhizobium meliloti to the plant flavone luteolin requires functional nodulation genes. J. Bacteriology 170: 3164-3169.

 

Caetano-Anollés, G. and W.D. Bauer. 1988. Enhanced nodule initiation on alfalfa by wild-type Rhizobium meliloti co-inoculated with nod gene mutants and other bacteria. Planta 174: 385-395.

 

Caetano-Anollés, G. and W.D. Bauer. 1988. Feedback regulation of nodule formation in alfalfa. Planta 175: 546-557.

 

Caetano-Anollés, G., L.G. Wall, A.T. DeMicheli, E.M. Macchi, W.D. Bauer, and G. Favelukes. 1988. Role of motility and chemotaxis in efficiency of nodulation by Rhizobium meliloti. Plant Physiology 86: 1228-1235.

 

Caetano-Anollés, G. and G. Favelukes. 1986. Quantitation of adsorption of rhizobia in low numbers to small legume roots. Appl. Environ. Microbiology 52: 371-376.

 

Caetano-Anollés, G. and G. Favelukes. 1986. Host-symbiont specificity expressed during early adsorption of Rhizobium meliloti to the root surface of alfalfa. Appl. Environ. Microbiology 52: 377-382.

 

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Top / Books / Articles in Peer-reviewed Journals / Chapters in Books and Proceedings

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Chapters in Books and Proceedings

 

Caetano-Anollés, D., and G. Caetano-Anollés, 2016. The phylogenomic roots of translation.  In G. Hernandez, R. Jagus (ed.), Evolution of the protein synthesis machinery and its regulation. Springer-Verlag, Heidelberg, Germany. Pp. 9-30. DOI 10.1007/978-3-319-39468-8_2

 

Caetano-Anollés, G., F. Gräter, and F. Mughal. 2015. Mining the evolutionary dynamics of protein loop structure and its role in biological functions. In N. Gainor (ed.), Blue Waters. Sustained Petascale in Action: Enabling Transformative Research, National Center for Supercomputing Applications. pp. 130-131.

 

Caetano-Anollés, G., F. Gräter, C. Debes, D. Mercadante, and F. Mughal. 2014. The dynamics of protein disorder and its evolution: Understanding single molecule FRET experiments of disordered proteins. In N. Gainor (ed.), Blue Waters. Sustained Petascale Computing in Action: Enabling Transformative Research, National Center for Supercomputing Applications. pp. 120-121.

 

Caetano-Anollés, G. 2013. The phylogenomic roots of modern biochemistry, translation and the genetic code. Book of Abstracts, Albany 2013: The 18th Conversation, June 11-15, 2013, J. Biomol. Struct. Dynamics 31 (supplement): 14.

 

Aziz, F., P. Chan, J. Osorio, B.F. Minhas, V. Parekatt, and G. Caetano-Anollés. 2012. Stress induces biphasic-rewiring and modularization in the metabolomics networks of Escherichia coli (paper ID: B464), Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM12), Philadelphia, Pennsylvania, USA, Oct. 4-7, 2012.

 

Nasir, A., A. Naeem, M.J. Khan, H.D. Lopez-Nicora, and G. Caetano-Anollés. 2011. The functional make up of proteomes is remarkably conserved (paper ID: P260), Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM11), Atlanta, Georgia, USA, Nov. 12-15, 2011.

 

Karnia, J., K. Delfino, M. Villamil, G. Caetano-Anollés, and Sandra Rodriguez-Zas. 2011. A strategy for reconstructing complex immune gene co-expression networks (paper ID: P254). Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM11), Atlanta, Georgia, USA, Nov. 12-15, 2011.

 

Zavala, C., N. Serão, M. Villamil, G. Caetano-Anollés, and S. Rodriguez-Zas. 2011. Additive and multiplicative genome-wide association models identify genes associated with growth (paper ID: P240). Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM11), Atlanta, Georgia, USA, Nov. 12-15, 2011.

 

Bukhari, S.A. and G. Caetano-Anollés. 2011. Evolution of protein architectures inferred from phylogenomic analysis of CATH (paper ID: P263). Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM11), Atlanta, Georgia, USA, Nov. 12-15, 2011.

 

Caetano-Anolles, G., L.S. Yafremava, and J.M. Mittenthal. 2010. Modularity and dissipation in the evolution of molecular function, structures and networks. In G. Caetano-Anollés (ed.), Evolutionary bioinformatics and systems biology. Wiley-Blackwell, Hoboken, NJ. PP. 431-450.

 

Sun, F.-J., A. Harish and G. Caetano-Anolles.  2010. Phylogenetic utility of RNA structure: evolution’s arrow and emergence of modern biochemistry and diversified life. In G. Caetano-Anollés (ed.), Evolutionary bioinformatics and systems biology. Wiley-Backwell, Hoboken, NJ. PP. 329-360.

 

Caetano-Anolles, G.  2008. Evolutionary genomics: linking macromolecular structure, genomes and biological networks.  In P. Dion and C.S. Nautiyal (eds), Molecular Mechanisms of Plant and Microbe Coexistence, Spring Verlag, Heidelberg, Germany, pp.155-181.

 

Trigiano, R.N., M.H. Ament, S.L. Finley, R.E. DeVries, N.R. Rowland and G. Caetano-Anollés.  2007. Molecular techniques used for studying systematics and evolution of plant pathogens. In R.N. Trigiano, M.T Windham and A.S. Windham (eds.), Plant Pathology: Concepts and Laboratory Exercises (second edition). pp. 279-307. CRC Press. Boca Raton, FL.

 

Caetano-Anollés, G. 2005. Teaching Bioinformatics: needs and challenges. In R. Chakravarthy (ed.), Agri-Informatics: An Introduction, pp. 15-22.  ICFAI Univ. Press. Hiderabad, India.

 

Trigiano, R.N., M.H. Ament, L.F. Habera and G. Caetano-Anollés.  2003. Molecular techniques used for studying systematics and evolution of plant pathogens. Ibid.  pp. 217-232.

 

Abesha, E. and G. Caetano-Anollés. 2003. Studying the ecology, systematics and evolution of plant pathogens. In R.N. Trigiano, M.S. Windham and M.T. Windham (eds.), Plant Pathology: Concepts and Laboratory Exercises. pp.209-216. CRC Press.  Boca Raton, FL.

 

Caetano-Anollés, G. 2001. Arbitrarily amplified DNA: new molecular approaches to plant breeding, ecology and evolution. In Radioactively labeled DNA probes for crop improvement, pp. 35-50. IAEA-Tecdoc-1253. International Atomic Energy Agency. Vienna, Austria,

 

Caetano-Anollés, G. 2001. Plant genotyping using arbitrarily amplified DNA. In R. Henry (ed.), DNA fingerprinting of plants. pp. 29-46. CAB International, Oxford, UK.

 

Caetano-Anollés, G. 2000. Evolution of RNA secondary structure and genome size in the grasses. Plant Molecular Biology Reporter 18 (2, supplement): S21-3.

 

Caetano-Anollés, G. 1999. DAF optimization using Taguchi methods and the effect of thermal cycling parameters on DNA amplification (paper and update). In M. McClelland and A.B. Pardee (eds.), Expression Genetics: Accelerated and High-Throughput Methods. pp. 113-126. Eaton Publishing, Natick, MA.

 

Caetano-Anollés, G. 1998. Arbitrary oligonucleotides: primers for amplification and direct identification of nucleic acids, genes and organisms. In B. Schierwater and R. DeSalle (eds.), Molecular Ecology and Evolution: Approaches and Applications, 2nd. edition. pp. 107-123. Birkhauser Verlag, Basel, Switzerland.

 

Caetano-Anollés, G. 1997. Nucleic acid scanning by amplification with mini-hairpin and microsatellite oligonucleotide primers. In G. Caetano-Anollés and P.M. Gresshoff (eds.), DNA markers: Protocols, Applications and Overviews. pp. 91-112. John Wiley & Sons, New York, NY.

 

Gresshoff, P.M., L.M. Callahan, F. Ghassemi and G. Caetano-Anollés. 1997. Molecular genetic analysis of turfgrass. In M.B. Sticklen and M. Kenna (eds.), Turfgrass Biotechnology. pp. 3-18. Ann Arbor Press, Chelsea, MI.

 

Gresshoff, P.M. and G. Caetano-Anollés. 1997. Commercial applications of DNA profiling by amplification with arbitrary oligonucleotide primers. In P.M. Gresshoff (ed.), Technology Transfer of Plant Biotechnology, pp. 131-148. CRC Press, Boca Raton, FL.

 

Caetano-Anollés, G. 1997. DNA amplification fingerprinting. In R. M. Micheli and R. Bova (eds.), Fingerprinting methods based on PCR. pp. 65-80. Springer-Verlag, Heidelberg, Germany.

 

Caetano-Anollés, G. 1997. Fingerprint tailoring. Ibid. pp. 103-117.

 

Caetano-Anollés, G. 1997. Resolving DNA amplification products using polyacrylamide gel electrophoresis and silver staining. Ibid. pp. 119-134.

 

Caetano-Anollés, G. 1997. Recovering amplified DNA from silver stained gels. Ibid. pp. 153-160.

 

Caetano-Anollés, G., R. N. Trigiano, and M. T. Windham. 1996. Fine population structure of Discula destructiva. HortScience 31: 586 (Abstract 121).

 

Caetano-Anollés, G., R. N. Trigiano, and M. T. Windham. 1996. Fine population structure of Discula destructiva. Proceedings of the Southern Nurserymen’s Association Research Conference 41: 174-177.

 

Caetano-Anollés, G., J.E. Padilla, F. Ghassemi, S. Abbitt, A. Kolchinsky, and P.M. Gresshoff. 1996. Positional cloning of nodulation genes in soybean: coupling DNA amplification and bulked segregant analysis. In I.A. Tikhonovich, V.I. Romanov, N.A. Povorov and W.E. Newton (eds.), Nitrogen Fixation: Fundamentals and Applications, p. 479. Kluwer Academic Pub., Dordrecht.

 

Padilla, J.E., G. Caetano-Anollés, D. Landau-Ellis, and P.M. Gresshoff. 1996. Analysis of sequence characterized amplified regions (SCAR) derived from AFLP markers linked to the supernodulation locus of soybean. In I.A. Tikhonovich, V.I. Romanov, N.A. Povorov and W.E. Newton (eds.), Nitrogen Fixation: Fundamentals and Applications, p. 481. Kluwer Academic Pub, Dordrecht.

 

Caetano-Anollés, G., and R.N. Trigiano. 1996. Recovery of DNA amplification products from silver stained polyacrylamide gels. In B.A. White (ed.), Methods in Molecular Biology, Vol. 67: PCR Cloning Protocols: From Molecular Cloning to Genetic Engineering. pp. 111-127. Humana Press, Totowa, NJ.

 

Gresshoff, P.M., G. Caetano-Anollés, R.P. Funke, F. Ghassemi, J. Padilla, G. Crüger, S. Pillai, J. Stiller, R. Chian, A. Filatov, R. McDonnell, S. Tupale, Q. Jian, L. Calfee-Richardson, and D. Landau-Ellis. 1996. Gene discovery in early plant nodulation responses and systemic regulation of nodulation. In G. Stacey, B. Mullins and P.M. Gresshoff (eds.), The Biology of Plant Microbe Interactions, pp. 369-376. APS Publisher, Minneapolis, MN.

 

Scott, M.C., G. Caetano-Anollés and R.N. Trigiano. 1995. DNA amplification fingerprinting (DAF) identifies closely related cultivars in six series of chrysanthemum. HortScience 30:777.

 

Trigiano, R. N., G. Caetano-Anollés, and M. T. Windham. 1995. Discula destructiva, an introduced pathogen of North American dogwoods. Proceedings of the Southern Nurserymen’s Association Research Conference, 40:233-234.

 

Gresshoff, P.M., A. Kolchinsky, J. Deckert, D. Landau-Ellis, R. Funke, N. Taranenko, R. Prabhu. and G. Caetano-Anollés. 1995. Plant genome analysis: general benefits from a study of soybean nodulation genes. In K. A. Malik, A. Nasim and A. M. Khalid (eds.), Biotechnology for Sustainable Development. pp. 59-80. National Institute for Biotechnology & Genetic Engineering, Faisalabad, Pakistan.

 

Gresshoff, P.M., R.P. Funke, G. Caetano-Anollés, R. Prabhu, S. Pillai, A. Kolchinsky, and D. Landau-Ellis. 1995. Application of high molecular weight DNA cloning in legume nodulation gene analysis. In Induced Mutations and Molecular Techniques for Crop Improvement, pp. 275-285. IAEA Publications, Vienna, Austria.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting: a general tool with applications in breeding, identification and phylogenetic analysis of plants. In B. Schierwater, B. Streit, G.P. Wagner, and R. DeSalle (eds.), Molecular Ecology and Evolution: Approaches and Applications, pp. 17-31, Birkhauser Verlag, Basel, Switzerland.

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1994. Multiple arbitrary amplicon profiling using short oligonucleotide primers. In P.M. Gresshoff (ed.), Plant Genome Analysis. pp. 29-45. CRC Press, Boca Raton, FL.

 

Gresshoff, P. M., G. R. Funke, D. Landau-Ellis, G. Caetano-Anollés, A. Kolchinsky, and J. Deckert. 1993. Genome analysis of a soybean nodulation region. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. p. 341. Kluwer Academic Pub., Dordrecht.

 

Caetano-Anollés, G., B.J. Bassam, R. Prabhu, B.K. Tamot and P.M. Gresshoff. 1993. Fingerprinting genomes with arbitrary primers: finding MAAP markers linked to the soybean nts locus. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. p. 331. Kluwer Academic Pub., Dordrecht.

 

Trigiano, R.N., B.J. Bassam, G. Caetano-Anollés, L.M. Bell, K.R. Weaver and M.T. Windham. 1993. Physiological and molecular aspects of dogwood anthracnose fungi. Proceedings of the 7th Regional Dogwood Workshop. pp.34-38. Chatanooga, TN.

 

Trigiano, R.N., B.J. Bassam, G. Caetano-Anollés and M.T. Windham. 1993. Characterization of isolates of Discula destructiva and Discula species using DNA amplification fingerprinting. Phytopathology 83: 1338 (Abstr.).

 

Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1993. Nodule morphogenesis in the absence of Rhizobium. In R. Palacios, J. Mora and W.E. Newton (eds.), New Horizons in Nitrogen Fixation. pp. 297-302. Kluwer Academic Pub., Dordrecht, Netherlands.

 

Jayarao, B.M., B.J. Bassam, G. Caetano-Anollés, P.M. Gresshoff, and S.P. Oliver. 1992. DNA amplification fingerprinting: a new technique for subtyping Streptococcus uberis. Journal of Dairy Science 75: 309.

 

Trigiano, R.N., G. Caetano-Anollés, B.J. Bassam, K.R. Weaver, M.T. Windham and P.M. Gresshoff. 1992. DNA amplification fingerprinting of dogwood anthacnose fungi. Proceedings of the Southern Nurserymen’s Association Research Conference, 37:196-199.

 

Gresshoff, P.M., D. Landau-Ellis, R. Funke, L. Sayavedra-Soto and G. Caetano-Anollés. 1991. Plant genetic control of nodulation in legumes. In H. Hennecke and D. P. S. Verma (eds.), Advances in Molecular Genetics of Plant-Microbe Interactions. pp. 331-335. Kluwer Academic Publishers, Dordrecht, Netherlands.

 

Caetano-Anollés, G., B.J. Bassam and P.M. Gresshoff. 1992. DNA amplification fingerprinting with very short primers. Applications of RAPD Technology to Plant Breeding. Joint Plant Breeding Symposia Series. pp.18-25. Crop Science Society of America – American Society of Horticultural Science – American Genetics Association, Minneapolis, MN.

 

Bassam, B.J., G. Caetano-Anollés and P.M. Gresshoff. 1992. DNA amplification fingerprinting and its potential application for genome analysis. In P. M. Gresshoff (ed.), Current Topics in Plant Molecular Biology. Plant Biotechnology and Development. pp. 1-9. CRC Press, Boca Raton, FL.

 

Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1992. Nodulation in the absence of Rhizobium. Ibid. pp. 67-76.

 

Gresshoff, P.M. and G. Caetano-Anollés. 1992. Systemic control of nodulation in soybean. Ibid. pp. 52-61.

 

Caetano-Anollés, G., P.A. Joshi and P.M. Gresshoff. 1990 Spontaneous nodules induce autoregulation of nodule formation in alfalfa. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p.728. Chapman and Hall, New York.

 

Caetano-Anollés, G. and P.M. Gresshoff. 1990. Alternative mechanisms control nodulation in legumes. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives.p. 727. Chapman and Hall, New York.

 

Joshi, P.A., G. Caetano-Anollés, E.T. Graham and P.M. Gresshoff. 1990 Ultrastructural development of spontaneous nodules in alfalfa. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p. 744. Chapman and Hall, New York.

 

Gerahty, N., G. Caetano-Anollés, P.A. Joshi, and P.M. Gresshoff. 1990 Distribution of Bradyrhizobium-induced cell divisions in soybean. In P. M. Gresshoff, L. E. Roth, G. Stacey and W. E. Newton (ed.), Nitrogen Fixation: Achievements and Objectives. p. 737. Chapman and Hall, New York.

 

Gresshoff, P.M., J.E. Olsson, Z.Z. Li, and G. Caetano-Anollés. 1989. Root-shoot interaction in the control of nodulation in soybean. In D.D. Randall and D.G. Blevins (eds.), Current Topics in Plant Biochemistry and Physiology, Vol. 8. pp. 125-139. Univ. of Missouri, Columbia, MO.

 

Gresshoff, P.M., B.J. Bassam, L. Sayavedra-Soto, A.J. Krotzky, R. McDonnell, S. Angermuller, D. Landau-Ellis, L.J. Schuller, J. Bond, T. Sutherland, P. Joshi, N. Gerahty, G. Caetano-Anollés, and Z.Z. Li. 1989. Molecular analysis of the genetic control of nodulation and nitrogen fixation in soybean. In A. J. Pascale (ed.), World Soybean Research Conference IV, Proceedings. pp. 1257-1262. Buenos Aires, Argentina.

 

Caetano-Anollés, G., D.K. Crist-Estes, and W.D. Bauer. 1988. Chemotaxis of Rhizobium meliloti towards the plant flavone luteolin and dependence on functional nodulation genes. In H. Bothe, F.J. de Bruijn, and W.E. Newton. (ed.), Nitrogen Fixation: Hundred Years after. p. 460. Gustav Fischer, New York.

 

Caetano-Anollés, G., L.G. Wall, A.T. DeMicheli, E.M. Macchi, and G. Favelukes. 1985. Attachment of nonmotile and nonchemotactic mutants of Rhizobium meliloti to alfalfa roots. In H.J. Evans, P.J. Bottomley, and W.E. Newton (ed.), Nitrogen Fixation Research Progress. p. 257. Matinus Nijhoff Publishers, Boston.

 

Favelukes, G. and G. Caetano-Anollés. 1985. Rhizobium meliloti specifically attached to alfalfa roots, obligatory precursor towards nodulation. In H.J. Evans, P.J. Bottomley, and W.E. Newton (ed.), Nitrogen Fixation Research Progress. p. 259. Martinus Nijhoff Publishers, Boston.

 

Lagares, A., G. Caetano-Anollés, and G. Favelukes. 1987. Requirements of Ca++ or Mg++ and pH for early adsorption of Rhizobium meliloti to alfalfa roots. Anales de la XIII Reunión Latinoamericana sobre Rhizobium (October 19-25, 1986). Panamá.

 

Caetano-Anollés, G. and G. Favelukes. 1986. Specific attachment of Rhizobium meliloti to the root surface of alfalfa. Anais XII Reunião Latinoamericana sobre Rhizobium (October 21-26, 1984). pp. 243-249. Campinas, SP, Brasil.

 

Caetano-Anollés, G. and G. Favelukes. 1981. Evaluación cuantitativa de la adhesividad de rizobios a raíces. Libro de Actas de la Reunión Nacional de Fijación Biológica de Nitrógeno. pp. 291-311. La Plata.

 

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Top / Books / Articles in Peer-reviewed Journals / Chapters in Books and Proceedings

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